Cloud Prediction of Protein Structure and Function with PredictProtein for Debian.
We report the release of PredictProtein for the Debian operating system and derivatives, such as Ubuntu, Bio-Linux, and Cloud BioLinux. The PredictProtein suite is available as a standard set of open source Debian packages. The release covers the most popular prediction methods from the Rost Lab, in...
| Publicado en: | BioMed Research International Vol. 2013; pp. 398968 - 398969 |
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| Autores principales: | , , , , , , , , , , , , |
| Formato: | research tables/charts Journal Article |
| Publicado: |
Wiley-Blackwell
2013
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| Acceso en línea: | Ver este registro en EBSCOhost |
| fields | @attributes: recordID: 1 pdfLink: plink: https://search.ebscohost.com/login.aspx?direct=true&db=ccm&AN=104089588&site=ehost-live header: @attributes: shortDbName: ccm uiTerm: 104089588 longDbName: CINAHL Complete uiTag: AN controlInfo: bkinfo: dissinfo: jinfo: jid: 23146133 FT2T jtl: BioMed Research International issn: 23146133 maglogo: N pubinfo: dt: 2013 vid: 2013 pid: 480 pub: Wiley-Blackwell place: Malden, Massachusetts artinfo: ui: 104089588 104089588 2012235130 NLM23971032 PMC3732596 104089588 ppf: 398968 ppct: 1 formats: fmt: @attributes: type: P tig: atl: Cloud Prediction of Protein Structure and Function with PredictProtein for Debian. aug: au: Kaján, László Yachdav, Guy Vicedo, Esmeralda Steinegger, Martin Mirdita, Milot Angermüller, Christof Böhm, Ariane Domke, Simon Ertl, Julia Mertes, Christian Reisinger, Eva Staniewski, Cedric Rost, Burkhard affil: TUM, Department of Informatics, Bioinformatics & Computational Biology-I12, Boltzmannstraß 3, 85748 Garching, Germany. sug: subj: Internet Models, Theoretical Models, Biological Programming Languages Proteins Software Amino Acids Nucleotides Computer Simulation Data Mining Methods Resource Databases Documentation Sequence Analysis Methods Biochemical Phenomena Human ab: We report the release of PredictProtein for the Debian operating system and derivatives, such as Ubuntu, Bio-Linux, and Cloud BioLinux. The PredictProtein suite is available as a standard set of open source Debian packages. The release covers the most popular prediction methods from the Rost Lab, including methods for the prediction of secondary structure and solvent accessibility (profphd), nuclear localization signals (predictnls), and intrinsically disordered regions (norsnet). We also present two case studies that successfully utilize PredictProtein packages for high performance computing in the cloud: the first analyzes protein disorder for whole organisms, and the second analyzes the effect of all possible single sequence variants in protein coding regions of the human genome. pubtype: Academic Journal doctype: research tables/charts Journal Article ougenre: Article language: English refInfo: holdings: @attributes: islocal: N |
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