MITRE system for clinical assertion status classification.

Objective: To describe a system for determining the assertion status of medical problems mentioned in clinical reports, which was entered in the 2010 i2b2/VA community evaluation 'Challenges in natural language processing for clinical data' for the task of classifying assertions associated with prob...

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Detalles Bibliográficos
Publicado en:Journal of the American Medical Informatics Association Vol. 18; no. 5; pp. 563 - 568
Autores principales: Clark C, Aberdeen J, Coarr M, Tresner-Kirsch D, Wellner B, Yeh A, Hirschman L, Clark, Cheryl, Aberdeen, John, Coarr, Matt, Tresner-Kirsch, David, Wellner, Ben, Yeh, Alexander, Hirschman, Lynette
Formato: research Journal Article
Publicado: Oxford University Press / USA Sep2011
Acceso en línea:Ver este registro en EBSCOhost
Descripción
Sumario:Objective: To describe a system for determining the assertion status of medical problems mentioned in clinical reports, which was entered in the 2010 i2b2/VA community evaluation 'Challenges in natural language processing for clinical data' for the task of classifying assertions associated with problem concepts extracted from patient records.Materials and Methods: A combination of machine learning (conditional random field and maximum entropy) and rule-based (pattern matching) techniques was used to detect negation, speculation, and hypothetical and conditional information, as well as information associated with persons other than the patient.Results: The best submission obtained an overall micro-averaged F-score of 0.9343.Conclusions: Using semantic attributes of concepts and information about document structure as features for statistical classification of assertions is a good way to leverage rule-based and statistical techniques. In this task, the choice of features may be more important than the choice of classifier algorithm.