SAROTUP: scanner and reporter of target-unrelated peptides.

As epitope mimics, mimotopes have been widely utilized in the study of epitope prediction and the development of new diagnostics, therapeutics, and vaccines. Screening the random peptide libraries constructed with phage display or any other surface display technologies provides an efficient and conv...

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Bibliographic Details
Published in:Journal of Biomedicine & Biotechnology pp. 101932 - 101933
Main Authors: Huang J, Ru B, Li S, Lin H, Guo FB
Format: research Journal Article
Published: Wiley-Blackwell 2010
Online Access:View this record in EBSCOhost
Description
Summary:As epitope mimics, mimotopes have been widely utilized in the study of epitope prediction and the development of new diagnostics, therapeutics, and vaccines. Screening the random peptide libraries constructed with phage display or any other surface display technologies provides an efficient and convenient approach to acquire mimotopes. However, target-unrelated peptides creep into mimotopes from time to time through binding to contaminants or other components of the screening system. In this study, we present SAROTUP, a free web tool for scanning, reporting and excluding possible target-unrelated peptides from real mimotopes. Preliminary tests show that SAROTUP is efficient and capable of improving the accuracy of mimotope-based epitope mapping. It is also helpful for the development of mimotope-based diagnostics, therapeutics, and vaccines.