Ontology-Oriented Programming for Biomedical Informatics..."Transforming Healthcare with the Internet of Things," Paris, France, 2016

Ontologies are now widely used in the biomedical domain. However, it is difficult to manipulate ontologies in a computer program and, consequently, it is not easy to integrate ontologies with databases or websites. Two main approaches have been proposed for accessing ontologies in a computer program...

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Bibliographic Details
Published in:Studies in Health Technology & Informatics Vol. 221; pp. 64 - 69
Main Author: LAMY, Jean-Baptiste
Format: computer program research tables/charts Journal Article
Published: Sage Publications Inc. Apr2016
Online Access:View this record in EBSCOhost
Description
Summary:Ontologies are now widely used in the biomedical domain. However, it is difficult to manipulate ontologies in a computer program and, consequently, it is not easy to integrate ontologies with databases or websites. Two main approaches have been proposed for accessing ontologies in a computer program: traditional API (Application Programming Interface) and ontology-oriented programming, either static or dynamic. In this paper, we will review these approaches and discuss their appropriateness for biomedical ontologies. We will also present an experience feedback about the integration of an ontology in a computer software during the VIIIP research project. Finally, we will present OwlReady, the solution we developed.