SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research.
Modern scientific endeavors increasingly require team collaborations to construct and interpret complex computational workflows. This work describes an image-analysis environment that supports the use of computational tools that facilitate reproducible research and support scientists with varying le...
| Publicado en: | Journal of Digital Imaging Vol. 31; no. 3; pp. 290 - 304 |
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| Autores principales: | , , , |
| Formato: | computer program diagnostic images equations & formulas pictorial tables/charts Journal Article |
| Publicado: |
Springer Nature
Jun2018
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| Acceso en línea: | Ver este registro en EBSCOhost |
| fields | @attributes: recordID: 1 pdfLink: plink: https://search.ebscohost.com/login.aspx?direct=true&db=ccm&AN=129685401&site=ehost-live header: @attributes: shortDbName: ccm uiTerm: 129685401 longDbName: CINAHL Complete uiTag: AN controlInfo: bkinfo: dissinfo: jinfo: jid: 08971889 DOQ jtl: Journal of Digital Imaging issn: 08971889 maglogo: N pubinfo: dt: Jun2018 vid: 31 iid: 3 pid: 237 pub: Springer Nature place: New York, New York artinfo: ui: 129685401 129685401 129685401 10.1007/s10278-017-0037-8 129685401 ppf: 290 ppct: 14 formats: fmt: – @attributes: type: T – @attributes: type: P tig: atl: SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research. aug: au: Yaniv, Ziv Lowekamp, Bradley C. Johnson, Hans J. Beare, Richard affil: TAJ Technologies Inc., 55425, Bloomington, MN, USA sug: subj: Collaboration Diagnostic Imaging Radiographic Image Interpretation, Computer-Assisted World Wide Web Applications ab: Modern scientific endeavors increasingly require team collaborations to construct and interpret complex computational workflows. This work describes an image-analysis environment that supports the use of computational tools that facilitate reproducible research and support scientists with varying levels of software development skills. The Jupyter notebook web application is the basis of an environment that enables flexible, well-documented, and reproducible workflows via literate programming. Image-analysis software development is made accessible to scientists with varying levels of programming experience via the use of the SimpleITK toolkit, a simplified interface to the Insight Segmentation and Registration Toolkit. Additional features of the development environment include user friendly data sharing using online data repositories and a testing framework that facilitates code maintenance. SimpleITK provides a large number of examples illustrating educational and research-oriented image analysis workflows for free download from GitHub under an Apache 2.0 license: <ext-link>github.com/InsightSoftwareConsortium/SimpleITK-Notebooks</ext-link>. pubtype: Academic Journal doctype: computer program diagnostic images equations & formulas pictorial tables/charts Journal Article ougenre: Article language: English refInfo: holdings: @attributes: islocal: N |
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