Gene selection for microarray data classification via subspace learning and manifold regularization.
With the rapid development of DNA microarray technology, large amount of genomic data has been generated. Classification of these microarray data is a challenge task since gene expression data are often with thousands of genes but a small number of samples. In this paper, an effective gene selection...
| Publicado en: | Medical & Biological Engineering & Computing Vol. 56; no. 7; pp. 1271 - 1285 |
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| Autores principales: | , , , |
| Formato: | Journal Article |
| Publicado: |
Springer Nature
Jul2018
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| Acceso en línea: | Ver este registro en EBSCOhost |
| fields | @attributes: recordID: 1 pdfLink: plink: https://search.ebscohost.com/login.aspx?direct=true&db=ccm&AN=130320739&site=ehost-live header: @attributes: shortDbName: ccm uiTerm: 130320739 longDbName: CINAHL Complete uiTag: AN controlInfo: bkinfo: dissinfo: jinfo: jid: 01400118 PO0 jtl: Medical & Biological Engineering & Computing issn: 01400118 maglogo: N pubinfo: dt: Jul2018 vid: 56 iid: 7 pid: 237 pub: Springer Nature place: New York, New York artinfo: ui: 130320739 130320739 NLM29256006 10.1007/s11517-017-1751-6 NLM29256006 130320739 ppf: 1271 ppct: 14 formats: fmt: – @attributes: type: T – @attributes: type: P tig: atl: Gene selection for microarray data classification via subspace learning and manifold regularization. aug: au: Tang, Chang Cao, Lijuan Zheng, Xiao Wang, Minhui affil: School of Computer Science, China University of Geosciences, 430074, Wuhan, People’s Republic of China sug: subj: Genes Oligonucleotide Array Sequence Analysis Methods Algorithms Genetics Neoplasms Resource Databases Scales ab: With the rapid development of DNA microarray technology, large amount of genomic data has been generated. Classification of these microarray data is a challenge task since gene expression data are often with thousands of genes but a small number of samples. In this paper, an effective gene selection method is proposed to select the best subset of genes for microarray data with the irrelevant and redundant genes removed. Compared with original data, the selected gene subset can benefit the classification task. We formulate the gene selection task as a manifold regularized subspace learning problem. In detail, a projection matrix is used to project the original high dimensional microarray data into a lower dimensional subspace, with the constraint that the original genes can be well represented by the selected genes. Meanwhile, the local manifold structure of original data is preserved by a Laplacian graph regularization term on the low-dimensional data space. The projection matrix can serve as an importance indicator of different genes. An iterative update algorithm is developed for solving the problem. Experimental results on six publicly available microarray datasets and one clinical dataset demonstrate that the proposed method performs better when compared with other state-of-the-art methods in terms of microarray data classification. Graphical Abstract The graphical abstract of this work. pubtype: Academic Journal doctype: Journal Article ougenre: Article language: English refInfo: holdings: @attributes: islocal: N |
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