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Automating Installation of the Integrating Biology and the Bedside (i2b2) Platform.

Informatics for Integrating Biology and the Bedside (i2b2) is an open source clinical data analytics platform used at more than 150 institutions for querying patient data. An i2b2 installation (called hive) comprises several i2b2 cells that provide different functionalities. Given the complex archit...

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Published in:Biomedical Informatics Insights no. 10; pp. 1 - 2
Main Authors: Wagholikar, Kavishwar B., Mendis, Michael, Dessai, Pralav, Sanz, Javier, Law, Sindy, Gilson, Micheal, Sanders, Stephan, Vangala, Mahesh, Bell, Douglas S., Murphy, Shawn N.
Format: research tables/charts Journal Article
Published: Sage Publications Inc. 2018
Online Access:View this record in EBSCOhost
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      dt: 2018
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      pub: Sage Publications Inc.
      place: Thousand Oaks, California
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        10.1177/1178222618777749
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        atl: Automating Installation of the Integrating Biology and the Bedside (i2b2) Platform.
      aug:
        au:
          Wagholikar, Kavishwar B.
          Mendis, Michael
          Dessai, Pralav
          Sanz, Javier
          Law, Sindy
          Gilson, Micheal
          Sanders, Stephan
          Vangala, Mahesh
          Bell, Douglas S.
          Murphy, Shawn N.
        affil: Massachusetts General Hospital, Boston, MA, USA
      sug:
        subj:
          Health Information Systems
          Systems Integration
          Software Design
          Automation
          Human
          Patient Record Systems
          Clinical Information Systems
          Databases, Health
          Information Storage
          Information Retrieval
          Data Warehouse
          Research Personnel
          Program Development
      ab: Informatics for Integrating Biology and the Bedside (i2b2) is an open source clinical data analytics platform used at more than 150 institutions for querying patient data. An i2b2 installation (called hive) comprises several i2b2 cells that provide different functionalities. Given the complex architecture of i2b2 installation, creating a working installation of the platform is challenging for new users. This is despite the availability of extensive documentation for i2b2 and access to a large and active mailing list community of i2b2 users. To address this problem, we have created an automated installation package, called i2b2-quickstart, which automatically downloads the latest i2b2 source code and dependencies, and compiles and configures the i2b2 cells to create a functional i2b2 hive installation. This package will serve as a convenient starting point and reference implementation that will facilitate researchers in the installation and exploration of the i2b2 platform.
      pubtype: Academic Journal
      doctype:
        research
        tables/charts
        Journal Article
      ougenre: Article
    language: English
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