Semantic Provenance Graph for Reproducibility of Biomedical Research Studies: Generating and Analyzing Graph Structures from Published Literature...The 17th World Congress of Medical and Health Informatics, 25-30 August 2019, Lyon, France
Objective: To characterize the scientific reproducibility of biomedical research studies by query and analysis of semantic provenance graphs generated from provenance metadata terms extracted from PubMed articles. Methods. We develop a new semantic provenance graph generation algorithm that uses a p...
| Publicado en: | Studies in Health Technology & Informatics Vol. 264; pp. 328 - 333 |
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| Autores principales: | , , , |
| Formato: | proceedings research tables/charts Journal Article |
| Publicado: |
Sage Publications Inc.
2019
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| Acceso en línea: | Ver este registro en EBSCOhost |
| fields | @attributes: recordID: 1 pdfLink: plink: https://search.ebscohost.com/login.aspx?direct=true&db=ccm&AN=138945738&site=ehost-live header: @attributes: shortDbName: ccm uiTerm: 138945738 longDbName: CINAHL Complete uiTag: AN controlInfo: bkinfo: dissinfo: jinfo: jid: 09269630 U1V jtl: Studies in Health Technology & Informatics issn: 09269630 maglogo: N pubinfo: dt: 2019 vid: 264 pid: 344 pub: Sage Publications Inc. place: Thousand Oaks, California artinfo: ui: 138945738 138945738 138945738 10.3233/SHTI190237 138945738 ppf: 328 ppct: 5 formats: tig: atl: Semantic Provenance Graph for Reproducibility of Biomedical Research Studies: Generating and Analyzing Graph Structures from Published Literature...The 17th World Congress of Medical and Health Informatics, 25-30 August 2019, Lyon, France aug: au: Sahoo, Satya S. Valdez, Joshua Rueschman, Michael Kim, Matthew affil: Department of Population and Quantitative Health Sciences, School of Medicine, Case Western Reserve University, Cleveland, OH, USA sug: subj: Reproducibility of Results Semantic Analysis Metadata Research, Medical PubMed Algorithms Database Design Ontologies Health Information Systems Data Analysis, Statistical Congresses and Conferences France France Human Funding Source ab: Objective: To characterize the scientific reproducibility of biomedical research studies by query and analysis of semantic provenance graphs generated from provenance metadata terms extracted from PubMed articles. Methods. We develop a new semantic provenance graph generation algorithm that uses a provenance ontology developed as part of the Provenance for Clinical and Health Research (ProvCaRe) project. The ProvCaRe project has processed and extracted provenance metadata from more than 1.6 million full text articles from the PubMed database. Results. The semantic provenance graph generation algorithm is evaluated using provenance terms extracted from 75 selected articles describing sleep medicine research studies. In addition, we use eight provenance queries to evaluate the quality of semantic provenance graphs generated by the new algorithm. Conclusion. The ProvCaRe project has created a unique resource to characterize the reproducibility of biomedical research studies and the semantic provenance graph generation algorithm enables users to effectively query and analyze the provenance metadata in the ProvCaRe knowledge repository. pubtype: Academic Journal doctype: proceedings research tables/charts Journal Article ougenre: Article language: English refInfo: holdings: @attributes: islocal: N |
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