Integrated Profiling of Gram-Positive and Gram-Negative Probiotic Genomes, Proteomes and Metabolomes Revealed Small Molecules with Differential Growth Inhibition of Antimicrobial-Resistant Pathogens.

Probiotics produce small molecules that may serve as alternatives to conventional antibiotics by suppressing growth of antimicrobial resistant (AMR) pathogens. The objective of this study was to identify and examine antimicrobials produced and secreted by probiotics using 'omics' profiling with comp...

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Publicado en:Journal of Dietary Supplements Vol. 20; no. 5; pp. 788 - 811
Autores principales: Hove, Petronella R., Nealon, Nora Jean, Chan, Siu Hung Joshua, Boyer, Shea M., Haberecht, Hannah B., Ryan, Elizabeth P.
Formato: equations & formulas research tables/charts Journal Article
Publicado: Taylor & Francis Ltd 2023
Acceso en línea:Ver este registro en EBSCOhost
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        19390211
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      jtl: Journal of Dietary Supplements
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      dt: 2023
      vid: 20
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      pub: Taylor & Francis Ltd
      place: Philadelphia, Pennsylvania
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        10.1080/19390211.2022.2120146
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        atl: Integrated Profiling of Gram-Positive and Gram-Negative Probiotic Genomes, Proteomes and Metabolomes Revealed Small Molecules with Differential Growth Inhibition of Antimicrobial-Resistant Pathogens.
      aug:
        au:
          Hove, Petronella R.
          Nealon, Nora Jean
          Chan, Siu Hung Joshua
          Boyer, Shea M.
          Haberecht, Hannah B.
          Ryan, Elizabeth P.
        affil: Department of Microbiology, Immunology, and Pathology, College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, CO, USA
      sug:
        subj:
          Gene Expression Profiling
          Gram-Positive Bacteria
          Gram-Negative Bacteria
          Probiotics
          Genome
          Proteomics
          Growth Inhibitors
          Drug Resistance, Microbial
          Bloodborne Pathogens
          Human
          Funding Source
          Metabolic Networks and Pathways
          Lactobacillus
          Escherichia Coli
      ab: Probiotics produce small molecules that may serve as alternatives to conventional antibiotics by suppressing growth of antimicrobial resistant (AMR) pathogens. The objective of this study was to identify and examine antimicrobials produced and secreted by probiotics using 'omics' profiling with computer-based metabolic flux analyses. The cell-free supernatant of Gram-positive Lacticaseibacillus rhamnosus GG (LGG) and Gram-negative Escherichia coli Nissle (ECN) probiotics inhibited growth of AMR Salmonella Typhimurium, Escherichia coli, and Klebsiella oxytoca ranging between 28.85 − 41.20% (LGG) and 11.48 − 29.45% (ECN). A dose dependent analysis of probiotic supernatants showed LGG was 6.27% to 20.55% more effective at reducing AMR pathogen growth when compared to ECN. Principal component analysis showed clear separation of ECN and LGG cell free supernatant metabolomes. Among 667 metabolites in the supernatant, 304 were differentially abundant between LGG and ECN probiotics. Proteomics identified 87 proteins, whereby 67 (ECN) and 14 (LGG) showed differential expression as enzymes related to carbohydrate and energy metabolic pathways. The whole genomes and metabolomes were next used for in-silico metabolic network analysis. The model predicted the production of 166 metabolites by LGG and ECN probiotics across amino acid, carbohydrate/energy, and nucleotide metabolism with antimicrobial functions. The predictive accuracy of the metabolic flux analysis highlights the novel utility for profiling probiotic supplements as dietary-based antimicrobial alternatives in the control of AMR pathogen growth.
      pubtype: Academic Journal
      doctype:
        equations & formulas
        research
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        Journal Article
      ougenre: Article
    language: English
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