Toward a Generalized Accelerator for Genome Sequence Analysis.
This article details the current state of hardware accelerators for dynamic programming (DP) algorithms for genomics applications with a look at Gu et al.’s work in “GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis” which aims to improve adaptability of these acc...
| Publicado en: | Communications of the ACM Vol. 68; no. 5; pp. 80 - 81 |
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| Formato: | Opinion |
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Association for Computing Machinery
May2025
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| Acceso en línea: | Ver este registro en EBSCOhost |
| fields | @attributes: recordID: 1 pdfLink: plink: https://search.ebscohost.com/login.aspx?direct=true&db=hlh&AN=184836343&site=ehost-live header: @attributes: shortDbName: hlh uiTerm: 184836343 longDbName: Humanities International Complete uiTag: AN controlInfo: bkinfo: jinfo: jid: 00010782 ACM jtl: Communications of the ACM issn: 00010782 maglogo: N pubinfo: dt: May2025 vid: 68 iid: 5 pid: 68 pub: Association for Computing Machinery artinfo: ui: 184836343 10.1145/3712253 ppf: 80 ppct: 1 formats: tig: atl: Toward a Generalized Accelerator for Genome Sequence Analysis. aug: au: Turakhia, Yatish affil: University of California San Diego, Department of Electrical and Computer Engineering, San Diego, CA, USA su: Genomics Dynamic programming Sequence analysis Algorithms Application-specific integrated circuits sug: subj: Genomics Dynamic programming Sequence analysis Algorithms Application-specific integrated circuits ab: This article details the current state of hardware accelerators for dynamic programming (DP) algorithms for genomics applications with a look at Gu et al.’s work in “GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis” which aims to improve adaptability of these accelerators. This article touches upon Gu et al’s summary of the three limited structural variations in DP kernels as well as details the two major components of GenDP- a programmable DP accelerator and a graph-partitioning algorithm. pubtype: Periodical doctype: Opinion src: R language: English refInfo: copyright: @attributes: flag: Y dt: @attributes: year: 2025 holdings: @attributes: islocal: N |
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