A Framework for Extracting, and Validating Named-Entities to Integrate Openehr Using the Example of Free Text Molecular Genetic Findings...20th World Congress on Medical and Health Informatics (MEDINFO), August 9-13, 2025, Taipei, Taiwan

Processing and extracting information from unstructured texts written by physicians in Hospitals is still an open problem. There is no efficient solution that ensures the reliability of the extracted information without any human intervention. Many factors, like the low availability of documents in...

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Publicado en:Studies in Health Technology & Informatics Vol. 329; pp. 708 - 713
Autores principales: LADAS, Nektarios, FRANZ, Stefan, SCHIECK, Maximilian, REHBERG, Alina, MARSCHOLLEK, Michael, GIETZELT, Matthias
Formato: proceedings research tables/charts Journal Article
Publicado: Sage Publications Inc. 2025
Acceso en línea:Ver este registro en EBSCOhost
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        atl: A Framework for Extracting, and Validating Named-Entities to Integrate Openehr Using the Example of Free Text Molecular Genetic Findings...20th World Congress on Medical and Health Informatics (MEDINFO), August 9-13, 2025, Taipei, Taiwan
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          LADAS, Nektarios
          FRANZ, Stefan
          SCHIECK, Maximilian
          REHBERG, Alina
          MARSCHOLLEK, Michael
          GIETZELT, Matthias
        affil: Peter L. Reichertz Institute for Medical Informatics, TU Braunschweig and Hannover Medical School, Germany
      sug:
        subj:
          Electronic Health Records
          Natural Language Processing
          Genetic Variation
          Information Storage
          Information Retrieval
          Data Quality Evaluation
          Congresses and Conferences Taiwan
          Taiwan
          Descriptive Statistics
          Database Management Software
          Data Analysis, Computer Assisted
      ab: Processing and extracting information from unstructured texts written by physicians in Hospitals is still an open problem. There is no efficient solution that ensures the reliability of the extracted information without any human intervention. Many factors, like the low availability of documents in the training phase, patient-sensitive information, and the complexity of the written texts can impact the results. Through our scientific journey, to integrate unstructured texts in openEHR, we have developed tools that together provide a complete process to efficiently extract, validate and integrate data in openEHR. As a use case, we demonstrate the free written texts in molecular genetic findings to present our results. The validation of the pipeline resulted in an F-score of 0.98.
      pubtype: Academic Journal
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        research
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      ougenre: Article
    language: English
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