Exploring Poly-beta-hydroxybutyrate Metabolism Through Network-based Extreme Pathway Analysis.

The objective of this article is to obtain a more detailed insight into poly-beta-hydroxybutyrate (PHB) metabolism through network-based metabolic pathway analysis. We employ extreme pathways to perform this study, because calculating and interpreting extreme pathways is a promising way for pathway...

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Detalles Bibliográficos
Publicado en:Biology Forum / Rivista di Biologia Vol. 101; no. 1; pp. 67 - 80
Autores principales: Dewu Ding, Yanrui Ding, Yujie Cai, Shouwen Chen, Wenbo Xu
Formato: Artículo
Publicado: Fabrizio Serra Editore 2008
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Acceso en línea:Ver este registro en EBSCOhost
Descripción
Sumario:The objective of this article is to obtain a more detailed insight into poly-beta-hydroxybutyrate (PHB) metabolism through network-based metabolic pathway analysis. We employ extreme pathways to perform this study, because calculating and interpreting extreme pathways is a promising way for pathway analysis and metabolic engineering. After giving an in silico model of butanoate metabolism of Bacillus thuringiensis 97-27 (btk), extreme pathways were calculated and classified. Furthermore, the type I and II extreme pathways were further classified and analyzed in detail based on their structure and functional capabilities. Besides "historical" biochemical pathways, the results also suggest that there are some novel pathways.