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Dynamics of Water and Ions Near DNA: Comparison of Simulation to Ti me-Resolved Stokes-Shift Experiments.

Time-resolved Stokes-shift experiments measure the dynamics of biomolecules and of the perturbed solvent near them on subnanosecond time scales, but molecular dynamics simulations are needed to provide a clear interpretation of the results. Here we show that simulations using standard methods quanti...

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Published in:Journal of the American Chemical Society Vol. 131; no. 5; pp. 1724 - 1736
Main Authors: Sen, Sobhan, Andreatta, Daniele, Ponomarev, Sergei V., Beveridge, David L., Berg, Mark A.
Format: Article
Published: American Chemical Society 2/11/2009
Subjects:
Biomolecules
Molecular dynamics
DNA
Water
Hydrodynamics
Online Access:View this record in EBSCOhost