Conformational Flexibility of DNA.

Pulsed Electron-Electron Double Resonance (PELDOR) on double-stranded DNA (ds-DNA) was used to investigate the conformational flexibility of helical DNA. Stretching, twisting, and bending flexibility of ds-DNA was determined by incorporation of two rigid nitroxide spin labels into a series of 20 bas...

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Detalles Bibliográficos
Publicado en:Journal of the American Chemical Society Vol. 133; no. 34; pp. 13375 - 13380
Autores principales: Marko, Andriy, Denysenkov, Vasyl, Margraf, Dominik, Cekan, Pavol, Schiemann, Olav, Sigurdsson, Snorri Th., Prisner, Thomas F.
Formato: Artículo
Publicado: American Chemical Society 8/31/2011
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Acceso en línea:Ver este registro en EBSCOhost
Descripción
Sumario:Pulsed Electron-Electron Double Resonance (PELDOR) on double-stranded DNA (ds-DNA) was used to investigate the conformational flexibility of helical DNA. Stretching, twisting, and bending flexibility of ds-DNA was determined by incorporation of two rigid nitroxide spin labels into a series of 20 base pair (bp) DNA duplexes. Orientation-selective PELDOR experiments performed at both X-band (9 GHz/0.3 T) and G-band (180 GHz/6.4 T) with spin label distances in the range of 2-4 nm allowed us to differentiate between different simple models of DNA dynaniics existing in the literature. All of our experimental results are in full agreement with a dynamic model for ds-DNA molecules, where stretching of the molecule leads to a slightly reduced radius of the helix induced by a cooperative twist-stretch coupling.